Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs10253247 chr7:64149320 A/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs10257573 chr7:64185391 A/G 0 174 22.57 21.98 2.4 KM Plot
UCEC rs10258126 chr7:2063281 A/C 8.2E-9 172 22.2 23.47 4.5 KM Plot
UCEC rs1035950 chr5:77785858 G/A 3.03E-5 172 18.37 26.07 21.6 KM Plot
UCEC rs10423465 chr19:9814352 A/G 1.52E-5 174 21.55 31.05 15.57 KM Plot
UCEC rs10454687 chr14:75380189 G/A 3.52E-5 171 22.8 18.33 1.67 KM Plot
UCEC rs10456326 chr6:25919662 G/A 3.12E-5 167 21.85 25.87 13.93 KM Plot
UCEC rs10469206 chr18:52463001 A/G 7.66E-9 174 4.5 16.87 25.78 KM Plot
UCEC rs10471409 chr5:54395848 T/C 2.22E-7 171 21.1 27.78 20.33 KM Plot
UCEC rs10471932 chr5:54366496 G/A 3.06E-12 173 21.1 28.03 18.47 KM Plot
UCEC rs10476859 chr5:143558369 A/G 6.24E-9 173 22.57 29.03 2.45 KM Plot
UCEC rs10476860 chr5:143558841 C/G 7.23E-9 172 22.57 30.62 2.45 KM Plot
UCEC rs10483258 chr14:22307701 A/G 8.49E-5 171 22.72 20.17 10.93 KM Plot
UCEC rs10483850 chr14:73342496 A/G 7.81E-7 169 22.7 21.6 10.33 KM Plot
UCEC rs10483875 chr14:77140264 A/C 3.05E-7 174 22.6 27.2 3.82 KM Plot